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1 Centre for Microbiology Research, Kenya Medical Research Institute, PO Box 43640, Nairobi, Kenya
2 Department of Medical Microbiology and Genito-Urinary Medicine, University of Liverpool, Liverpool L69 3GA, UK
3 Department of Medical Microbiology, Kenyatta National Hospital, PO Box 20723, Nairobi, Kenya
4 Central Veterinary Investigations Laboratory, PO Private Bag, Kabete, Kenya
Correspondence
Samuel Kariuki
skariuki{at}kemri.org
Received 15 October 2005
Accepted 26 January 2006
Abbreviations: NTS, non-typhoidal salmonellae.
| INTRODUCTION |
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In all sub-Saharan African countries where they have been studied, NTS are the commonest or second-commonest cause of bacteraemia in children under 5 years of age (Bahwere et al., 2001; Berkley et al., 2005; Graham, 2002; Green & Cheesbrough, 1993; Lepage et al., 1990). They are also the second-commonest cause of neonatal meningitis, the third-most-common cause of bacterial meningitis in children over 2 months of age in Malawi (Molyneux et al., 2003), and an important cause of septic arthritis (Lepage et al., 1990) and neonatal sepsis (Milledge et al., 2005). It is estimated that the minimum incidence of community-acquired NTS in rural and urban populations of children may be as high as 166 per 100 000 per year for children under 5 years of age (Berkley et al., 2005; Mwangi et al., 2002). Of all admissions with febrile illness, NTS constitute 18 % of cases and result in 28 % mortality, compared to 5·7 % mortality in children that do not have bacteraemia (P<0·001). In particular, multidrug-resistant S. Typhimurium causes serious outbreaks. For example, in Zaire (Cheesbrough et al., 1997; Green & Cheesbrough, 1993) and Rwanda (Lepage et al., 1990), multidrug-resistant S. Typhimurium is the predominant cause of bacteraemic illness in children, while in Kenya this serotype is the predominant isolate in children with salmonellae bacteraemia (Kariuki et al., 2002, 2005; Mwangi et al., 2002). The source and mode of transmission of NTS in the African context have remained unknown, although it is thought that human-to-human transmission may play an important role, and we have been unable to demonstrate the presence in humans of multidrug-resistant NTS that are phenotypically and genotypically similar to the NTS found in food animals in Kenya (Kariuki et al., 2002). We report a prospective study that looked at NTS from children with bacteraemia and compared them with the serotypes and genotypes of NTS isolated from family contacts and environmental samples from the homes of index cases.
| METHODS |
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Specimens from contacts, animals and environment at home. Index cases from whom NTS were isolated were followed to their home areas, where more epidemiological data were obtained and the following specimens taken: rectal swabs or fecal specimens from siblings and parents of the index cases, water from nearby rivers and streams, and raw and cooked food from the homes of the index cases and from vendors in markets serving the areas. In addition, rectal swabs from farm animals, including pigs, chickens, cows and goats, were taken from around the homes of index cases or from neighbouring homes.
Laboratory procedures. Blood cultures and stool specimens were processed using standard techniques. Briefly, blood cultures were incubated in 5 % CO2 at 37 °C for 18 h, and if signs of bacterial growth were observed (air bubbles, turbidity, or both) they were subcultured on sheep blood agar and chocolate agar. The remaining blood cultures were reincubated for a further 7 days or until positive. Stools were processed by direct plating onto selective media (XLD and brilliant green agar) (Oxoid) and by overnight enrichment in selective Selenite F broth (Oxoid) followed by plating onto XLD and brilliant green agar, and incubated in air at 37 °C for 18 h. NTS were identified using agglutinating antisera (Murex Biotech), and their identification was confirmed biochemically using API 20E strips (API System).
Environmental samples were initially cultured in RappaportVassiliadis soya broth (Oxoid) for enrichment. The broth culture was then subcultured onto XLD and brilliant green agar. NTS were identified as for blood and stool cultures. All NTS isolates were stored at 70 °C on Protect beads (Technical Service Consultants) until analysed.
Antimicrobial susceptibility testing. Susceptibilities to various antimicrobials, ampicillin, coamoxiclav, tetracycline, cotrimoxazole, chloramphenicol, gentamicin, nalidixic acid, ciprofloxacin, cefuroxime and ceftriaxone, were determined by both controlled disc diffusion and measuring MICs using E-test strips (AB BIODISK) according to the manufacturer's instructions. Escherichia coli ATCC 25922 (with known MICs) was used as a control for potency of antibiotic discs and E-test strips. Disc diffusion susceptibility tests and MICs were interpreted according to the guidelines provided by the National Committee for Clinical Laboratory Standards (2002).
PFGE of macrorestricted chromosomal DNA.
Chromosomal DNA from NTS isolates was prepared in agarose plugs as described previously (Kariuki et al., 2002). DNA in agarose plugs was digested using 25 U each of XbaI or SpeI (Roche Diagnostics). PFGE of agarose plug inserts was then performed on a CHEF-DR III system (Bio-Rad Laboratories) on a horizontal 1 % agarose gel for 20 h at 120 V, with a pulse time of 140 s at 14 °C. A lambda DNA digest consisting of a ladder (
22 fragments) of increasing size from 50 to
1000 kb was included as a DNA size standard. The gel was stained with ethidium bromide and photographed on a UV transilluminator (UVP Inc.). The restriction endonuclease digest patterns were compared, and their similarities were scored by the method of Tenover et al. (1995) and by using the Dice similarity coefficient formula 2h/(a+b), where h is the number of matching bands, and a+b is the total number of bands including matching and non-matching. Isolates that differed in their PFGE fragment patterns by one or two bands were regarded as closely related, as minor mutational changes would result in such patterns.
Mating experiments and plasmid extraction. Conjugation experiments were carried out in broth, as previously described by Kariuki et al. (2002), with E. coli K-12 (NalR, Lac+) as recipient. All NTS tested were susceptible to nalidixic acid. Transconjugants were selected on MacConkey agar (Oxoid) supplemented with nalidixic acid (32 mg l1) and ampicillin or chloramphenicol (32 mg l1 each). Plasmid DNA extraction was performed using a Plasmid Mini Prep kit (Qiagen) according to the manufacturer's instructions. Plasmids were separated by electrophoresis on horizontal 0·8 % agarose gels at 100 V for 2 h. Plasmid sizes were determined by co-electrophoresis with plasmids of known sizes from E. coli strains V517 (NCTC 50193) (53·7, 7·2, 5·6, 3·9, 3·0, 2·7, 2·1 kb) and 39R861 (NCTC 50192) (147, 63, 43·5, 6·9 kb). DNA bands were visualized with a UV transilluminator (UVP) after staining with 0·05 % ethidium bromide.
Statistical analysis. We compared proportions of characteristics in index cases against those in contacts and animal/environmental samples by using the chi square and Fisher's exact tests.
| RESULTS AND DISCUSSION |
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Contacts and environmental isolates
A total of 127 (66 %) parents and guardians gave written consent for follow-up of index cases to their homes for further specimen collection. Although a large proportion (62; 48·8 %) of these homes were located within the three major slum areas around the city of Nairobi, most (84 %) of the homes had access to treated running water. However, due to frequent water shortages in several city suburbs, most families stored water in cans, pots and plastic tanks for several days. A total of 66 % of the population sampled did not have any animals at home. Among the 43 (34 %) families who had animals, the majority (76 %) kept five to ten chickens for eggs in the backyard, and one dog or cat. A few families (28; 22 %) grew vegetables in small gardens in their back yards for domestic use, but the majority bought supplies from vendors in neighbouring greengrocers and kiosks. Only 20 homes kept a milking cow for their own use and also sold any extra milk to neighbours.
From the 127 homes sampled we obtained a total of 32 (6·9 %) NTS from rectal swabs and faeces of 467 siblings and parents of index cases, and these came from 29 homes. Some 21 (65·6 %) of these NTS serotypes were identical to serotypes obtained from the corresponding index cases. In addition, we obtained NTS from two cows from two homes and 8/180 (4·4 %) NTS isolates from water, vegetables and soil samples from four other homes visited (Table 2
). Four (2·2 % prevalence) S. Typhimurium isolates from three soil samples and a water sample from three different homes also corresponded to the serotypes obtained from the index cases from the homes.
Antibiotic susceptibility of NTS and resistance plasmids
A total of 45 (23·4 %) NTS from cases and 10 (31·3 %) from contacts were fully susceptible to all antibiotics tested, while only 5 % of NTS were resistant to only one antibiotic, mainly to ampicillin. A large proportion (66; 34·2 %) of NTS from cases were resistant to three or more antibiotics; the most common resistance phenotypes were ampicillin, tetracycline and cotrimoxazole resistance in two-thirds of the isolates, and tetracycline, gentamicin and chloramphenicol or ampicillin resistance in 15 % of the isolates. There were no significant differences in the prevalence of resistance between the two major serotypes S. Typhimurium and S. Enteritidis (P=0·087). Ciprofloxacin and ceftriaxone were the only antibiotics to which all NTS were fully susceptible. Table 3
shows the MIC values of NTS from cases for 10 commonly available antibiotics. The MIC values for the 21 NTS serotypes from 18 contacts, and from two soil samples and a water sample at the homes of index cases, were either identical (89 %) or within one dilution (11 %) of MICs of the NTS from corresponding cases.
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In Africa and most other developing regions, multidrug resistance, particularly to commonly available antibiotics, remains a major challenge for the healthcare system (Bonfiglio et al., 2002; Kariuki et al., 2005; World Health Organization, 2000). In particular, multidrug-resistant NTS have caused life-threatening invasive disease outbreaks in children in many African countries, including Zaire (Cheesbrough et al., 1997; Green & Cheesbrough, 1993), Rwanda (Lepage et al., 1990), Nigeria (Adejuyigbe et al., 2004) and Malawi (Graham, 2002; Milledge et al., 2005). In Tanzania (Vaagland et al., 2004), multidrug-resistant S. Enteritidis was the main isolate in an outbreak of nosocomial meningitis in children from a rural community, while in the Central African Republic (Kassa-Kelembho et al., 2003), multidrug-resistant S. Typhimurium was the predominant cause of community-acquired bacteraemic illness in both children and in adults. In our study, only 23·4 % of NTS from cases of severe bacteraemia in children were fully susceptible to all antibiotics tested, while a large proportion (66; 34·2 %) of the NTS were multiply resistant to three or more commonly available antibiotics, including ampicillin, chloramphenicol, cotrimoxazole and tetracycline. It is noteworthy that the availability of these antibiotics over the counter and without prescription mainly for self-treatment of suspected infection in humans may have played a major role in the high prevalence of the multidrug-resistance phenotype. In addition, the availability of cheaper generic drugs of variable quality for treatment of bacterial infections may also have contributed to the increased levels of resistance. Multidrug-resistant NTS strains causing severe bacteraemia in children also pose a major public health concern in Kenya, since they are more difficult to treat, as more expensive and less readily available drugs such as ciprofloxacin and ceftriaxone will be required.
Genotypes of NTS from bacteraemia and from contacts from homes of index cases
Genotyping by PFGE was performed for the two common serotypes S. Typhimurium (106 isolates) and S. Enteritidis (64 isolates) from the cases, and a corresponding 21 S. Typhimurium and 15 S. Enteritidis isolates from homes of index cases. Fragments less than 100 kb were excluded from analysis, as they may have been plasmids, especially from the antibiotic-resistant NTS. XbaI- and SpeI-digested chromosomal DNA fragment analysis revealed a total of three main patterns (comprising 88 % of all isolates; 65 % in pattern 1, 11 % in pattern 2 and 6 % in pattern 3) for S. Typhimurium and two main patterns for S. Enteritidis (comprising 84 % of all isolates; 72 % in pattern 1 and 12 % in pattern 2) (Fig. 1
), with digest fragments ranging in size from 50 to 650 kb and within a one to two band difference for each PFGE pattern. The remaining strains within each of the two main NTS serotypes were distantly related to the main clones (between three and five band differences between 50 and 200 kb in size). A total of 28/42 NTS (including four environmental isolates from soil and water) from homes of index cases produced digest patterns that were indistinguishable from those of NTS from corresponding index cases (Fig. 2
). Another four S. Typhimurium isolates from healthy children at home were closely related (less than three band differences) to corresponding NTS from cases.
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Epidemiology of NTS
Most studies, particularly in industrialized countries, have implicated farm animals as the main reservoirs of NTS, and infections have often been associated with food contamination, either in homes or in the food production industry (Angulo et al., 2000; Hsueh et al., 2004; Tauxe, 1997). However, the sources and transmission dynamics of NTS in Africa have remained unknown, and it was only speculated that person-to-person transmission, in addition to sporadic foodborne outbreaks, played a significant role in community-acquired NTS bacteraemia in children. Our study observed that a significant number (a prevalence of 6·9 %) of NTS from siblings and parents of index cases were of the same serotype and antibiotic-susceptibility profiles, and were clonal in origin. In this portion of the community, NTS behaved in a similar manner to typhoid in terms of the characteristics of asymptomatic carriage. It is probable that the finding of NTS in family contacts of an index case represents either a situation in which all family members acquired the bacterium at the same time or that the index case became infected from other family members or vice versa. NTS may also precipitate serious infection in these carriers if malnutrition, underlying illness and immunosuppression are present, and the carriers may also shed NTS into the environment, providing a possible source of infection to other children in the home. It is possible that transmission may occur through food, water or contamination of surfaces within the home. Significantly, this study did not find a major reservoir of NTS in animals or food in the homes of index cases; the only NTS that matched those from corresponding index cases were all isolated from soil samples and a water sample.
In studies of sepsis in children aged between 6 months and 2 years from Malawi (Graham, 2002; Milledge et al., 2005), it has been observed that increased numbers of cases of NTS bacteraemia during the rainy season are strongly associated with an upsurge in cases of malaria and anaemia. However, our study was based in a highland area where malaria is not endemic, and hence this association may not apply. In another study, Cherubin et al. (1969) have found that an association between salmonellosis and low-income areas of New York City was particularly marked for childhood cases of S. Typhimurium. The authors hypothesize that S. Typhimurium maintains itself by human-to-human transmission, whereas other serotypes are introduced into the community by food vehicles. However, in our study, both S. Typhimurium and S. Enteritidis were isolated from contacts in proportions almost equivalent to those among cases, lending credence to the supposition that human-to-human transmission is important for both serotypes. In sub-Saharan Africa, it will be important to monitor carriage of multidrug-resistant NTS in the community as a possible source of severe bacteraemic infections in children.
| ACKNOWLEDGEMENTS |
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| REFERENCES |
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