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Division of Infectious Diseases, Department of Internal Medicine1 and Hospital Infection Control Unit2, Chang Gung Memorial Hospital-Kaohsiung Medical Center, Taiwan, ROC
Correspondence Jien-Wei Liu 88b0{at}adm.cgmh.org.tw
Received August 20, 2003
Accepted April 13, 2004
Methylobacterium species are environmental opportunistic bacteria, and urinary tract infection (UTI) caused by these pathogens has not yet been documented. Four cases of UTI with Methylobacterium bacteraemia in immunocompetent female patients are reported. Their urine cultures, processed according to standard procedures (i.e. incubation at 35 °C in ambient air for 24 h before incubation at room temperature for a further 24 h), were either negative or positive for Escherichia coli. Specially designed experiments indicated that colonies of Methylobacterium species were visualized on blood agar only after incubation at 35 °C for at least 40 h, and growth was completely suppressed when concurrently incubated with much smaller inocula of E. coli. The isolates were variably susceptible to cephalosporins, but 100 % susceptible to aminoglycosides. This study suggests an underdiagnosis of UTI caused by Methylobacterium species when the standard procedure of processing urine cultures is used, and implies that administration of aminoglycosides is important when treatment of UTIs with cephalosporin fails.
| INTRODUCTION |
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CGMH-KS is a 2500-bed medical centre in southern Taiwan serving as a primary care and tertiary referral centre, whose clinical microbiology laboratory processes urine specimens in accordance with standard procedures (Pezzio, 1988). Briefly, the collected urine specimens are inoculated on blood agar plates (BAP) and eosin-methylene blue (EMB) agar. These plates are then incubated in ambient air at 35 °C for an initial 24 h and then in ambient air at room temperature for a further 24 h. If no visible colony growth is found, or the colony count is found to be < 1000 c.f.u. ml1 after 48 h, the urine culture report will be negative', or colony count < 1000 c.f.u. ml1', with no further identification of the bacterium.
The clustered cases of UTI with Methylobacterium bacteraemia found in our institute raised questions concerning the pathogenesis of Methylobacterium species in UTI. Are they opportunistic pathogens, or are they commonly colonizing bacteria, if not normal flora, having the ability, like other environmental bacteria, to cause UTI in immunocompetent hosts? Furthermore, does the processing of urine specimens in a clinical microbiology laboratory lead to a negative urine culture and, in turn, to an underestimation of the incidence and clinical importance of UTI caused by Methylobacterium species? We report these cases and, to clarify these puzzles, performed experiments in an attempt to determine whether the standard procedure in clinical microbiology laboratories leads to an underdiagnosis of UTI caused by Methylobacterium species.
| METHODS |
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Case 2. A 55-year-old woman was hospitalized in April 2000 having suffered from fever for 2 days, with dysuria and progressive left flank pain. Her medical history was unremarkable. Urinalysis disclosed pyuria with a white cell count of 6065 cells per HPF and a negative nitrite reaction. Because of the possibility of acute pyelonephritis, she received treatment with parenteral cefazolin for 1 week and oral cephradine for another week. Her urine culture was negative; however, blood culture grew Methylobacterium species, which were susceptible to the prescribed first-generation cephalosporin. The patient recovered uneventfully under antimicrobial therapy.
Case 3. A 2-year-old girl was presented to our ED in May 2000, because of a 1-day high fever up to 39 °C. Urinalysis showed pyuria with a white cell count of 5055 per HPF with a positive nitrite reaction. The patient received an empirical antibiotic treatment with ampicillin and gentamicin. Urine culture subsequently showed E. coli with a bacterial load of 75 000 c.f.u. ml1 and another Gram-negative bacillus with a bacterial load of 9000 c.f.u. ml1, which was not identified. Blood culture subsequently grew Methylobacterium species. The empirically used antibiotics were switched to cephalothin according to the susceptibility of the pathogen from blood culture. The girl recovered after antibiotic treatment.
Case 4. A 43-year-old female farmer presented to our ED in July 2000 due to a 1-week fever, dysuria and right flank pain. She had underlying bilateral renal calyceal stones. Urinalysis showed pyuria with a white cell count of 1113 cells per HPF, microhaematuria with a red cell count of 2123 cells per HPF and a negative nitrite reaction. Because of the possibility of acute pyelonephritis, she received treatment with parenteral cefuroxime and gentamicin for 5 days and subsequent oral cotrimoxazole therapy for 10 days. Her urine culture was negative; however, her blood culture grew Methylobacterium species. She recovered uneventfully under antimicrobial therapy.
Bacterial identification.
The four isolates of Methylobacterium species from blood of the four separate patients reported above were numbered corresponding to case number. In a 48 h culture, each isolate grew Gram-negative vacuolated rods producing pink pigment on nutrient agar (NA; Difco) at 25 °C but not at 42 °C, and did not grow on MacConkey agar (MAC; BBL Microbiology). Biochemical tests showed that all strains were positive for indophenol oxidase, catalase and urease, except for Methylobacterium species no. 3 which was negative for urease. They reduced nitrate and were motile. For each isolate, acid production in oxidative fermentation base with 1 % glucose, xylose, fructose, mannitol and lactose was negative; it was positive for 1 % methanol. The morphology and biochemical testing of these four isolates fulfilled the criteria for identification of Methylobacterium species (Schrenckenberger & von Graevenitz, 1999; Rutherford et al., 1988; Wallace et al., 1990; Smith et al., 1985). In a further phenotypic identification (Zaharatos et al., 2001), imipenem (10 µg) and meropenem (10 µg) disks (BBL SensiDisc, Becton Dickinson) were placed on Sabouraud dextrose agar (SDA; BBL Microbiology) and incubated at 25 °C for 72 h. All strains were susceptible to imipenem, but resistant to meropenem (NCCLS, 2002).
Observations of growth of Methylobacterium species and E. coli in tryptic soy broth (TSB) and in urine at 35 °C.
Bacterial suspensions of the respective isolates of Methylobacterium species and E. coli ATCC 25922 were independently adjusted with 0.9 % saline to obtain a turbidity visually comparable to that of 0.5 McFarland nephelometer standards. E. coli strain ATCC 25922 was used for all experiments. One millilitre of each of the above suspensions was independently mixed with 3 ml TSB (BBL Microbiology) and 3 ml sterile urine. Sterile urine was from a volunteer clinician, who provided urine for all experiments. The urine was proven to be sterile as it showed negative bacterial growth on concurrently spread EMB agar plates and BAP (both from BBL Microbiology). The TSB- and urine-diluted bacterial suspensions were inoculated at 35 °C for a total of 72 h. Bacterial counts of each isolate of Methylobacterium species and E. coli were measured at 0, 4, 8, 12, 24, 36, 48, 60 and 72 h by enumerating the number of colonies from 10-fold serially diluted specimens of 100 µl aliquots of the suspensions plated on BAP and EMB agar. The plates were then incubated in ambient air at 35 °C for 72 h. Although colonies were found at each time-point on both agar media, the colonies of Methylobacterium species were bigger and visibly clearer on BAP than on EMB, suggesting that BAP was more favourable for the growth of Methylobacterium species. For facilitating counting of bacterial colonies, BAP was therefore used for the growth of Methylobacterium species in all of the following experiments.
Observations of growth behaviour of Methylobacterium species in urine under conditions simulating the routine processing in a clinical microbiology laboratory and at 35 °C for a total of 72 h.
(i) One millilitre of bacterial suspensions of the isolates of Methylobacterium species at 0.5 McFarland standard were independently mixed with 3 ml sterile urine and then spread on separate BAPs. The inoculated BAPs were incubated in ambient air at 35 °C for an initial 24 h and at room temperature for a subsequent 48 h. (ii) Each isolate of Methylobacterium species was prepared and spread onto BAPs as described in (i); however, the inoculated BAPs were incubated in ambient air at 35 °C for a total of 72 h. Bacterial growth of Methylobacterium species in (i) and (ii) were measured at 0, 4, 8, 12, 16, 20, 24, 28, 32, 36, 40, 44, 48, 52, 56, 60, 64, 68 and 72 h by counting the visible colonies.
Observations of growth behaviour of Methylobacterium sp. 3 and E. coli in respective urines concurrently inoculated with a fixed inoculum of Methylobacterium sp. 3 and different inocula of E. coli.
Because similar growth behaviour of these four isolates of Methylobacterium species was observed, Methylobacterium sp. 3 was arbitrarily chosen and was adjusted with 0.9 % saline to 0.5 McFarland standard. E. coli suspension at 0.5 McFarland standard was likewise obtained. One millilitre of Methylobacterium sp. 3 suspension was mixed with 1 ml of E. coli suspensions with a bacterial load of about 103, 104 and 105 c.f.u. ml1. The suspensions of E. coli with different bacterial loads were obtained by serial 10-fold dilution of the original suspension at 0.5 McFarland standard. Urines mixed with a fixed inoculum of Methylobacterium sp. 3 and different inocula of E. coli were incubated in ambient air at 35 °C for a total of 72 h. Bacterial counts of Methylobacterium sp. 3 and E. coli were measured at 0, 4, 8, 12, 24, 36, 48, 60 and 72 h by counting the number of colonies from 10-fold serially diluted specimens of 100 µl aliquots of the mixed suspensions plated on BAPs. All experiments were performed at least twice for confirmation of the result.
Antimicrobial susceptibility.
Susceptibility testing was performed using the disk diffusion method in accordance with NCCLS guidelines for Enterobacteriaceae (NCCLS, 2002). MuellerHinton agar (Difco) was used and the following 14 antimicrobial disks were included: cefazolin (30 µg), cefuroxime (30 µg), ceftazidime (30 µg), ceftriaxone (30 µg), ampicillin (10 µg), amoxycillin/clavulanate (20/10 µg), ciprofloxacin (5 µg), piperacillin (100 µg), imipenem (10 µg), gentamicin (10 µg), amikacin (30 µg), nalidixic acid (30 µg), nitrofurantoin (300 µg) and trimethoprim/sulfamethoxazole (1.25/23.75 µg). All disks were purchased from BBL Becton Dickinson. E. coli ATCC 25922 was used as a control.
| RESULTS |
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Growth behaviour of Methylobacterium species in urine (i) when incubated in ambient air at 35 °C for an initial 24 h and at room temperature for a subsequent 48 h and (ii) when incubated at 35 °C for a total of 72 h
(i) Colonies of Methylobacterium species were not found to have grown by 24 h. All isolates of Methylobacterium species produced fuzzy colonies on BAP at 48 h, which grew into pinpoint colonies at 52 h. Gram-stained smears of the colonies showed vacuolated Gram-negative bacilli under microscopic examination, which were morphologically compatible with Methylobacterium species. (ii) In contrast to the slow growth in experiment (i), when incubated at a constant 35 °C, colonies of Methylobacterium species emerged at 40 h, and approximately 100 visible colonies were detected on each BAP at 48 h (Fig. 2).
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Growth behaviour of Methylobacterium sp. 3 and E. coli in urine concurrently inoculated with a fixed inoculum of Methylobacterium sp. 3 (about 107 c.f.u. ml1) and different inocula of E. coli (about 103, 104 and 105 c.f.u. ml1) at 35 °C
No colonies of Methylobacterium sp. 3 could be detected at any time-point throughout the 72 h incubation in ambient air, whereas colonies of E. coli developed rapidly at a speed in proportion to the inoculum size (Fig. 3).
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Susceptibilities
Antibiotic susceptibilities of the isolated Methylobacterium species are shown in Table 1. Briefly, they were variably resistant to ß-lactam antibiotics including cephalosporins, nalidixic acid, nitrofurantoin and trimethoprim/sulfamethoxazole and were 100 % susceptible to ciprofloxacin, imipenem and aminoglycosides.
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| DISCUSSION |
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Although patients with Methylobacterium infections reported previously were immunocompromised, the patients with UTI and secondary Methylobacterium bacteraemia in this report were apparently immunocompetent. Our report suggests that UTI caused by Methylobacterium species has long been undiagnosed. Murray et al. (1992) reported that urine specimens containing members of Enterobacteriaceae can be reliably incubated for a full 24 h, and then all specimens with uropathogen growth < 104 c.f.u. ml1 should be incubated for an additional day to ensure accurate quantification. Specimens from patients with suspected slow-growing organisms such as fungi should be incubated for a minimum of 2 days at 35 °C. Our experiments in growth characteristics of the fastidious Methylobacterium species further support the conclusion made by Murray and colleagues. Patients considered to be at risk for development of UTI due to Methylobacterium species should include those involved in gardening, farming, as well as outdoor activities with soil or plant contact and, perhaps, those from the rural community. Previous underdiagnosis of UTI due to Methylobacterium species has limited clinicians awareness of UTI caused by this pathogen. The clinical characteristics of UTI due to Methylobacterium species and the ability of Methylobacterium species from the urinary tract to invade the bloodstream deserve further study.
In agreement with a previous report, aminoglycosides were extremely active against Methylobacterium species in vitro, whereas ß-lactam drugs showed variable inhibitory effects (Brown et al., 1992). Half of our isolates were susceptible to trimethoprim/sulfamethoxazole. All isolates were resistant to nalidixic acid and all but one were resistant to nitrofurantoin. The present study implies that, in patients with UTI who show a poor clinical response to treatment with commonly used antibiotics such as cephalosporins, trimethoprim/sulfamethoxazole, nalidixic acid and nitrofurantoin, Methylobacterium species should be considered as a potential pathogen and managed accordingly by empirically adding the universally effective aminoglycosides until the pathogen is proven to be otherwise. This is especially true for patients with environmental exposure. The development of a cost-effective procedure for processing urine culture for commonly seen uropathogens in general, and which is sensitive for the detection of Methylobacterium species in particular, is required.
| ACKNOWLEDGEMENTS |
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| REFERENCES |
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