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J Med Microbiol 53 (2004), 249-254; DOI: 10.1099/jmm.0.05418-0
© 2004 Society for General Microbiology
ISSN 0022-2615

Colonization of the neonatal rat intestinal tract from environmental exposure to the anaerobic bacterium Oxalobacter formigenes

Janet G. Cornelius and Ammon B. Peck

Department of Pathology, Immunology and Laboratory Medicine, University of Florida College of Medicine, Gainesville, FL 32610, USA

Correspondence Ammon B. Peck peck{at}pathology.ufl.edu

Received August 8, 2003
Accepted December 15, 2003

Oxalobacter formigenes, an anaerobic bacterium that inhabits the mammalian gastrointestinal tract, has an important symbiotic relationship with its vertebrate hosts by regulating oxalic acid homeostasis. Epidemiological studies of O. formigenes colonization in man have shown that colonization occurs in young children, that every child can become colonized naturally, that >20 % lose colonization during adolescence or as adults and that stable colonization can be disrupted by antibiotic use or changes in diet, greatly affecting subsequent health. As O. formigenes is a fastidious anaerobe that seldom re-colonizes adults, the question arises as to how initial colonization occurs. To investigate this question, non-colonized female laboratory rats were placed on diets high in oxalate and were colonized by oesophageal gavage with O. formigenes either before or after being impregnated. Faecal specimens from their offspring were tested for the presence of O. formigenes. Although the bacterium was first detected in a few neonates as early as 7 days post-partum, colonization of all the offspring did not occur until after weaning. In each case, the offspring were colonized with the bacterial strain carried by their mothers. To determine whether O. formigenes colonization occurs vertically or horizontally, newborn rats were placed with foster mothers that were either non-colonized or colonized with an O. formigenes strain different from that of their natural mothers. Colonization occurred temporally in a manner similar to natural colonization but all offspring became colonized only with the O. formigenes strain of the foster mothers. These data indicate that intestinal colonization occurs horizontally, but does not answer the question of how O. formigenes survives the aerobic environment in order to be transmitted.


Abbreviations: GI, gastrointestinal; lowCa/lowP, low calcium/low phosphate.


    INTRODUCTION
 TOP
 INTRODUCTION
 METHODS
 RESULTS AND DISCUSSION
 ACKNOWLEDGEMENTS
 REFERENCES
 
The gastrointestinal (GI) tract of the newborn infant is normally sterile but, soon after birth, becomes colonized rapidly with many different bacterial species (Long & Swenson, 1977). Several factors influence colonization including diet, environment, mode of delivery and the availability of an energy source and nutrients for the bacteria (Kirjavainen & Gibson, 1999; Grönlund et al., 1999; Dai & Walker, 1999). With conventional delivery, the newborn's intestine is first colonized with bacteria contacted during birth, i.e. bacteria that are part of the mother's normal vaginal and intestinal microflora. In the less-contaminated environment of a Caesarean delivery or a premature birth where the infant is kept in isolation, intestinal colonization is somewhat delayed with fewer strict anaerobes present than after vaginal delivery (Long & Swenson, 1977; Neut et al., 1987). Rodents are also born without an intestinal bacterial microflora and have a pattern of colonization similar to that seen in man (Krishnan & Ramakrishna, 1998).

Oxalobacter formigenes is an obligately anaerobic bacterium that colonizes the GI tracts of most vertebrates, including man (Allison et al., 1985). O. formigenes utilizes oxalic acid (or its anion, oxalate), a toxic by-product of metabolism and a common constituent of most diets, as its sole source of energy. There is evidence that this permits O. formigenes to maintain an important symbiotic relationship with its host by helping to regulate oxalic acid absorption in the intestine (especially the colon) as well as oxalic acid levels in the plasma (Allison et al., 1986; Hatch & Freel, 1996). Several studies (Goldkind et al., 1985; Kleinschmidt et al., 1994; Han et al., 1995; Sidhu et al., 1998, 1999) have shown that O. formigenes may influence a variety of oxalate-related diseases, the most notable being a direct relationship between the absence of the bacterium and increased episodes of recurrent kidney stone disease.

Previous studies (Sidhu et al., 1997b) have shown that natural colonization of the intestinal tract with O. formigenes can occur in children as early as 1 year of age but that it takes up to 8 years before colonization approaches 100 %. The onset of colonization with O. formigenes is delayed compared with other intestinal bacteria, possibly due to the lack of sufficient oxalate in the intestinal environment to support growth. Because of this delay in intestinal colonization, it seems unlikely that transmission of O. formigenes is directly from the mother at birth (vertical transmission). The more probable route of transmission is from the environment (horizontal transmission) even though O. formigenes, as a fastidious obligate anaerobe, is highly sensitive to oxygen and thought to be incapable of survival in air for any length of time. Experiments reported here were designed to determine whether colonization of offspring with O. formigenes comes directly from the mother or indirectly via the environment.


    METHODS
 TOP
 INTRODUCTION
 METHODS
 RESULTS AND DISCUSSION
 ACKNOWLEDGEMENTS
 REFERENCES
 
Laboratory rats.

Female and male Sprague–Dawley rats, weighing approximately 70 g each, were purchased from Harlan (Indianapolis, IN, USA) and maintained under conventional conditions in the Department of Animal Resources at the University of Florida, Gainesville. The rats were acclimatized for 2 or more days before the start of any experiment. Female rats were housed two to a cage in plastic cages with bedding and fed ad libitum with a semi-purified, low calcium (0.5 %)/low phosphate (0.4 %) (lowCa/lowP) synthetic diet, TD 89222 (Harlan Teklad, Madison, WI, USA), supplemented with 2 % (w/w) ammonium oxalate. Male rats were housed similarly but fed ad libitum regular laboratory food, except during periods of mating when they ate the same diet as the females. All rats maintained good health throughout the experiment with normal weight gains to about 350 g by the end of the experiments. The studies were approved by the Institutional Animal Care and Use Committee at the University of Florida, Gainesville.

O. formigenes.

O. formigenes strain OxWR, originally isolated from wild rats and classified as subgroup I, and strain OxGP, originally isolated from guinea pig and classified as subgroup II, were a gift from Dr Milton J. Allison (Iowa State University, Ames, IA, USA) and were stored as frozen stock cultures. The bacteria were grown in medium B containing 60 mM oxalate as described by Allison et al. (1985). Bacteria from overnight cultures were collected by centrifugation and resuspended under CO2 in medium B. An inoculum of approximately 20 x 108 bacteria ml-1 per rat was given by oesophageal gavage.

Collection of faecal and urine samples.

To collect 24 h urine samples and fresh faeces, rats were placed individually into metabolic cages and provided with food and water. Urine was collected over a 24 h period through Tygon tubing into tubes containing sodium azide and kept on ice. Faecal samples were collected directly from the rectum of the rat or from the faecal cup in the metabolic cage. Analyses of faecal samples from both male and female rats were performed initially and several times throughout the experiment to determine the presence or absence of O. formigenes. For analyses of faecal samples from rat pups younger than 15 days, pups were killed, the intestinal tracts were removed and the contents were flushed and used for the isolation of bacterial DNA.

Determination of urinary oxalate levels.

Twenty-four hour urinary excretion levels of oxalate were determined with a Diagnostics Oxalate Kit (Sigma Diagnostics). Baseline levels were established for all rats and compared to published results (Shevock et al., 1993).

Detection of O. formigenes by DNA analysis.

Genomic DNA was isolated from rat faecal samples, as described elsewhere (Sidhu et al., 1997a). In brief, bacterial DNA was prepared using the DNeasyTM Tissue Kit (Qiagen). The isolated DNA was used as the template in PCR amplification with primers specific for the oxc gene of O. formigenes. All PCR products were verified by Southern blot analysis with hybridization to internal probes, either a genus-specific probe for Oxalobacter or a subgroup-specific probe for Group I (OxWR) and Group II (OxGP) strains (Allison et al., 2004).

Detection of O. formigenes by anaerobic culture.

Approximately 20 mg of each faecal sample was inoculated anaerobically into culture vials containing 9 ml of medium B supplemented with 10 mM oxalate prepared anaerobically under high-grade CO2 (Allison et al., 1985). The cultures were incubated at 37 °C for 10–12 days after which a sample of medium was removed and checked for the catabolic consumption of oxalate by CaCl2 precipitation and spectrophotometric analysis. The disappearance of oxalate from the culture medium indicates the presence of an oxalic-acid-degrading micro-organism in the faecal sample, presumably O. formigenes.


    RESULTS AND DISCUSSION
 TOP
 INTRODUCTION
 METHODS
 RESULTS AND DISCUSSION
 ACKNOWLEDGEMENTS
 REFERENCES
 
Natural colonization of neonatal rats with O. formigenes

In an initial experiment, six timed-pregnant female Sprague–Dawley rats determined to be non-colonized with O. formigenes were placed on a lowCa/lowP diet, supplemented with 1.5 % ammonium oxalate starting on day e-15. On days e-19 and e-20, each mother was inoculated by oesophageal gavage with 20 x 108 bacteria from overnight cultures of O. formigenes strain OxWR. On day e-23, a total of 80 offspring were born. Starting at postnatal day 1 and repeated every 2 days until day 17, four pups were killed and the intestinal and rectal contents were collected for analyses. After day 17, faecal samples were collected directly from the rectums of individual rats. A portion of each faecal sample was inoculated for anaerobic culture and the remainder was used for the isolation of genomic DNA and subsequent PCR analysis. Although O. formigenes was first detected by PCR in a faecal specimen from one neonate at day 7, the first positive culture did not occur until day 13. By day 17 all cultures contained oxalate-degrading bacteria, whereas at day 20, only about 50 % of the PCRs were positive for O. formigenes, indicating a low level of colonization. Not until day 26 did 100 % of the rats test positive for O. formigenes both by culture and PCR. This temporal colonization of neonatal rats is summarized in Fig. 1.



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Fig. 1. Temporal development of natural colonization of neonatal rats with O. formigenes.

 

In a second experiment, female (n = 6) and male (n = 3) rats were subjected to an initial collection of urine and faecal specimens after being acclimatized for 10 days. PCR amplification of DNA from these faecal samples, followed by Southern blot analysis with the genus-specific internal probe for Oxalobacter, showed that none of the rats was colonized with this bacterium. Urinary oxalate levels were normal, averaging about 5.8 µmol day-1. Female rats were placed on a lowCa/lowP diet, supplemented with 2 % ammonium oxalate. Urine analyses 1 week later showed all rats to be hyperoxaluric, with urinary oxalate levels increasing from baseline levels to a mean of about 80.8 µmol day-1. The female rats were divided into three experimental groups (n = 2 rats per group). On days 10 and 11 after the diet change, they were inoculated by oesophageal gavage with 20 x 108 bacteria from overnight cultures of O. formigenes as follows: Group I rats received OxWR, Group II rats received OxGP and Group III rats received a mixture of OxWR and OxGP. Analyses of faecal samples collected on day 19 confirmed that all female rats were colonized with Oxalobacter. Because Southern blot analyses with the subgroup-specific probe for OxGP were negative or very weak at this time, rats in Groups II and III were given two additional doses of OxGP bacteria (20 x 108 bacteria per rat). Subsequent Southern blot analyses with the subgroup-specific probes showed that Group I rats were positive for OxWR, Group II rats were positive for OxGP and Group III rats were positive for both OxWR and OxGP (data not shown).

Once it was determined that the female rats were stably colonized, they were mated by placing a different non-colonized male with each pair of females per group. The males were removed once the females were noted to be pregnant. Individual mothers, together with their offspring, were housed in separate cages to prevent cross-contamination between litters of neonates. Starting on day 9 post-partum, and every 4–5 days thereafter, faecal specimens were collected from the offspring for analysis by PCR and Southern blot hybridizations with Group-specific probes. As predicted by the first experiment, O. formigenes was not detected in a faecal specimen until the second week of age and, at time of weaning (day 23 post-partum), about 70 % of specimens were positive. After weaning, however, the number of specimens positive for O. formigenes rapidly approached 100 % (Table 1). Offspring of mothers inoculated with strain OxWR (Group I) showed colonization with only OxWR, while offspring of mothers inoculated with strain OxGP (Group II) showed colonization with only OxGP. Interestingly, offspring of mothers inoculated with both OxWR and OxGP often became colonized with both strains, indicating that two strains of O. formigenes can inhabit the GI tract simultaneously.


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Table 1. Natural colonization of offspring matches environmental contamination with O. formigenes
 

Vertical versus horizontal colonization of offspring

A second set of experiments was designed to determine if the offspring become colonized with O. formigenes by vertical or horizontal transmission. Timed-pregnant female Sprague–Dawley rats (n = 4) were housed individually under conventional conditions. Initially, all rats were found to be non-colonized with O. formigenes by DNA analysis. Two days later, the rats were placed on the lowCa/lowP synthetic diet supplemented with 1 % (w/w) ammonium oxalate and fed ad libitum throughout the experiment. On days 3 and 4 after the start of the diet regimen, each rat was inoculated by oesophageal gavage with 20 x 108 bacteria from an overnight culture of O. formigenes. Two rats were given OxWR (subgroup I) and two were given OxGP (subgroup II).

The four female rats delivered on day e-23. Approximately 3 h after birth, each litter of pups was taken from their mother and placed with a foster mother: all pups from OxWR-positive mothers were put with OxGP-positive mothers and all pups from OxGP-positive mothers were put with OxWR-positive mothers. By the following day, all mothers had adopted the new pups and were nursing. On days 8 and 15 post-partum, two pups from each litter were killed and the intestinal and rectal contents were collected for DNA analyses for the presence or absence of O. formigenes by PCR and Southern blot analysis. On days 23, 29 and 42 post-partum, faecal pellets were taken directly from the rectum of each of the remaining pups and assayed for the presence of O. formigenes. Southern blot analyses with subgroup-specific hybridization probes revealed that pups born to mothers inoculated with Group I bacteria (OxWR) and fostered by mothers inoculated with Group II bacteria (OxGP) became colonized with Group II bacteria (shown for day 29 in Fig. 2a). In contrast, pups born to mothers inoculated with Group II bacteria (OxGP) and fostered by mothers inoculated with Group I bacteria (OxWR) became colonized with Group I bacteria (Fig. 2b).



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Fig. 2. Southern blot analyses of faecal samples with Group-specific probes show that neonatal rats become colonized with the O. formigenes strain of their foster mothers. (a) Offspring of Group I-positive mothers fostered by Group II-positive mothers. (b) Offspring of Group II-positive mothers fostered by Group I-positive mothers.

 

In a separate experiment, two timed-pregnant female Sprague–Dawley rats were housed individually under conventional conditions. DNA analyses on faecal samples collected 1 day after their arrival showed that the rats were not colonized with O. formigenes. Beginning 2 days after their arrival, the rats were placed on the lowCa/lowP synthetic diet supplemented with 1 % (w/w) ammonium oxalate and fed ad libitum throughout the experiment. On days 2 and 3 after the start of the diet regimen, one of the rats was inoculated by oesophageal gavage with 20 x 108 bacteria from an overnight culture of O. formigenes subgroup I strain OxWR. DNA analysis after the second inoculation of OxWR showed this rat to be colonized while the other rat remained negative.

Both rats delivered 12 pups on day 6 after their arrival (e-21). Approximately 3 h after birth, the pups were taken from their mothers and half of each litter was placed with foster mothers: half of the pups (n = 6) from the OxWR-positive mother were put with the non-colonized mother and half of the pups (n = 6) from the non-colonized mother were put with the OxWR-positive mother. The other half of each litter was returned to the original mother. Both mothers were maintained on the oxalate-containing diet. By the following day, the mothers had adopted the new pups and were nursing normally. DNA analyses on faecal samples collected from the offspring at weaning (day 23) showed that all rats nursed by the colonized mother were positive for O. formigenes, while those nursed by the non-colonized mother were negative (Fig. 3).



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Fig. 3. Natural colonization with O. formigenes occurs only when neonatal rats are raised by a colonized mother regardless of the colonization status of the natural mother. (a) Offspring raised with non-colonized mother. (b) Offspring raised with colonized mother.

 

Observations from these two experiments indicate that the GI tract was colonized with the O. formigenes bacteria present in the environment during the pups’ development, not the bacterium colonizing the mother at time of birth. After weaning, the pups retained a robust colonization of O. formigenes as long as they were maintained on the low-calcium, high-oxalate diet. Once placed on a diet of normal rat food, colonization was lost within 1 week, irrespective of whether the normal rat food was supplemented with oxalate, confirming the importance of calcium in the diet to sequester oxalate and the maintenance of an adequate calcium-to-oxalate ratio to support O. formigenes colonization (unpublished results).

Laboratory rats, like many other animals raised under artificial conditions or in laboratory facilities and maintained in clean animal housing, are generally not colonized with O. formigenes (Daniel et al., 1987; personal observations); this was re-confirmed in the present study. This probably results from the use of rodent and animal foods high in calcium content but lacking sufficient oxalate for growth of O. formigenes. With an absolute requirement for oxalate as a nutrient and energy source, O. formigenes cannot survive long-term and is eventually lost from the breeding colonies. Studies in both man (Sidhu et al., 1997a) and rats (Cornelius et al., 2000) have shown that a diet low in oxalate and/or high in calcium results in a rapid decrease in O. formigenes colonization. At times, colonization can fall below detectable levels, even though the bacteria remain viable. This permits subsequent recovery when oxalate becomes bio-available in the GI tract; however, there appears to be a limit to the length of time O. formigenes can retain the ability to recover.

The development of the normal microbiota of the intestine of a newborn is a gradual process that is influenced by many factors, including the mode of delivery, environment, degree of hygiene during delivery, use of medications (particularly antibiotics) and diet (e.g. breast feeding versus formula feeding) (Kirjavainen & Gibson, 1999; Grönlund et al., 1999; Dai & Walker, 1999; Orrhage & Nord, 1999). Organisms transmitted vertically from mother to newborn are usually the result of vaginal colonization in the mother (Harvey et al., 1995; Matsumiya et al., 2002). The results of the current studies suggest that natural colonization with O. formigenes in the rat model, as in man, does not occur in utero or at the time of birth, but is delayed until the neonatal rats begin exploring their environment. The fact that the neonatal rats became colonized with the strain of O. formigenes of their nursing mothers, whether natural or foster mothers, indicates that this bacterium is acquired from the immediate environment rather than directly from their natural mother. This is further supported by the observation that offspring born to colonized mothers but fostered with non-colonized mothers never became colonized.

It is possible that the newborn rats could pick up the bacteria when suckling, not from the mother's milk but from organisms on the mother's fur or skin. However, stable colonization probably occurs from coprophagy as it has been shown that young laboratory rats begin to ingest maternal faeces at about 2 weeks of age (Novakova & Babicky, 1989), corresponding with the time O. formigenes is first detected in the neonates. More often, though, stable colonization of the bacterium in the intestinal tract appeared to be delayed until an oxalate source became available.

A comparison of natural colonization in experimental laboratory rats, as seen in the present study, with previous studies in human children (Sidhu et al., 1997b) reveals similarities in the temporal appearance and loss of O. formigenes in faecal specimens. Colonization in rats first occurs at about 1–2 weeks of age, when the pups first begin exploration of their cages. Colonization in human infants is first detected at about 9–12 months of age when children begin crawling. For both species, there is a rapid increase in frequency of colonization until nearly 100 % of offspring are colonized (3–4 weeks of age in rats and 4–8 years of age in man). Interestingly, following puberty, there is some loss of colonization, which is seen in both species, but is more prevalent in man. This is probably due to external factors, such as antibiotic treatments and changes in diet. Nevertheless, considering the results obtained from the rat experiments, we would predict that children could easily be infected with strains of O. formigenes quite different from their parents and more representative of their environment. Thus, it would be interesting to determine the diversity of strains present within families or even communities.

A further question remains unanswered: how do neonate rats and children become colonized if O. formigenes must be picked up from the environment? The bacterium appears to be passed by faecal–oral transmission, but as a strict and obligate anaerobe, the bacterium is highly susceptible even to low levels of oxygen. The question as to whether O. formigenes can persist in the environment longer than currently suspected or has a dormant state permitting it to survive in the air needs to be addressed. Much is yet to be learned about this unique bacterium.


    ACKNOWLEDGEMENTS
 TOP
 INTRODUCTION
 METHODS
 RESULTS AND DISCUSSION
 ACKNOWLEDGEMENTS
 REFERENCES
 
We thank Ms Pat Glenton for her technical assistance during these studies. This work was supported by Public Health Service grant R01 DK53556 from the NIDDK. A. B. P. is a scientific consultant to and has a financial interest in Ixion Biotechnology, Inc. (Alachua, FL, USA), an entity developing commercial products based on O. formigenes.


    REFERENCES
 TOP
 INTRODUCTION
 METHODS
 RESULTS AND DISCUSSION
 ACKNOWLEDGEMENTS
 REFERENCES
 

  • Allison, M. J., Dawson, K. A., Mayberry, W. R. & Foss, J. G. (1985). Oxalobacter formigenes gen.nov., sp. nov.: oxalate-degrading anaerobes that inhabit the gastrointestinal tract. Arch Microbiol 141, 1–7.[CrossRef][Medline]

  • Allison, M. J., Cook, H. M., Milne, D. B., Gallaher, S. & Clayman, R. V. (1986). Oxalate degradation by gastrointestinal bacteria from humans. J Nutr 116, 455–460.

  • Allison, M. J., MacGregor, B. & Stahl, D. A. (2004). Genus Oxalobacter. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2. Edited by G. M. Garrity. New York: Springer (in press).

  • Cornelius, J. G., Allison, M. J., Thamilselvan, S. & Peck, A. B. (2000). Colonization with Oxalobacter formigenes for the regulation of hyperoxaluria. In Urolithiasis 2000, pp. 185–188. Edited by A. L. Rodgers, A. Hesse, S. R. Khan, G. M. Preminger & S. A. Rondebosch. South Africa: Cape Town Press.

  • Dai, D. & Walker, W. A. (1999). Protective nutrients and bacterial colonization in the immature human gut. Adv Pediatr 46, 353–382.[Medline]

  • Daniel, S. L., Hartman, P. A. & Allison, M. J. (1987). Intestinal colonization of laboratory rats with Oxalobacter formigenes. Appl Environ Microbiol 53, 2767–2770.[Abstract/Free Full Text]

  • Goldkind, L., Cave, D. R., Jaffin, B., Robinson, W. & Bliss, C. M. (1985). A new factor in enteric hyperoxaluria: Oxalobacter formigenes. J Gastroenterol 80, 860. 860.

  • Grönlund, M.-M., Salminen, S., Mykkönen, H., Kero, P. & Lehtonen, O.-P. (1999). Development of intestinal bacterial enzymes in infants –relationship to mode of delivery and type of feeding. APMIS 107, 655–660.[Medline]

  • Han, J., Zhang, X., Li, J. & Zhang, Y. (1995). The relationship of Oxalobacter formigenes and calcium oxalate calculi. J Tongji Med Univ 15, 249–252.[Medline]

  • Harvey, B. S., Koeuth, T., Versalovic, J., Woods, C. R. & Lupski, J. R. (1995). Vertical transmission of Citrobacter diversus documented by DNA fingerprinting. Infect Control Hosp Epidemiol 16, 564–569.[Medline]

  • Hatch, M. & Freel, R. W. (1996). Oxalate transport across intestinal and renal epithelia. In Calcium Oxalate in Biological Systems, pp. 217–238. Edited by S. R. Khan. Boca Raton, FL: CRC Press.

  • Kirjavainen, P. V. & Gibson, G. R. (1999). Healthy gut microflora and allergy: factors influencing development of the microbiota. Ann Med 31, 288–292.[Medline]

  • Kleinschmidt, K., Mahlmann, A. & Hautmann, R. (1994). Oxalate-degrading bacteria in the gut –do they influence calcium oxalate stone formation? In Urolithiasis 2, pp. 439–441. Edited by R. Ryall. New York: Plenum.

  • Krishnan, S. & Ramakrishna, B. S. (1998). Butyrate and glucose metabolism in isolated colonocytes in the developing rat colon. J Pediatr Gastroenterol Nutr 26, 432–436.[CrossRef][Medline]

  • Long, S. S. & Swenson, R. M. (1977). Development of anaerobic fecal flora in healthy newborn infants. J Pediatr 91, 298–301.[CrossRef][Medline]

  • Matsumiya, Y., Kato, N., Watanabe, K. & Kato, H. (2002). Molecular epidemiological study of vertical transmission of vaginal Lactobacillus species from mothers to newborn infants in Japanese, by arbitrarily primed polymerase chain reaction. J Infect Chemother 8, 43–49.[Medline]

  • Neut, C., Bezirtzoglou, E., Romond, C., Beerens, H., Delcroix, M. & Noel, A. M. (1987). Bacterial colonization of the large intestine in newborns delivered by Cesarean section. Zentralbl Bakteriol Mikrobiol Hyg [A] 266, 330–337.

  • Novakova, V. & Babicky, A. (1989). Coprophagy in young laboratory rat. Physiol Bohemoslov 38, 21–28.

  • Orrhage, K. & Nord, C. E. (1999). Factors controlling the bacterial colonization of the intestine in breastfed infants. Acta Paediatr Suppl 88, 47–57.[CrossRef]

  • Shevock, P. N., Khan, S. R. & Hackett, R. L. (1993). Urinary chemistry of the normal Sprague–Dawley rat. Urol Res 21, 309–312.[CrossRef][Medline]

  • Sidhu, H., Allison, M. J. & Peck, A. B. (1997a). Identification and classification of Oxalobacter formigenes strains by using oligonucleotide probes and primers. J Clin Microbiol 35, 350–353.[Abstract]

  • Sidhu, H., Enatska, L., Ogden, S., Williams, W. N., Allison, M. J. & Peck, A. B. (1997b). Evaluating children in the Ukraine for colonization with the intestinal bacterium Oxalobacter formigenes, using a polymerase chain reaction-based detection system. Mol Diagn 2, 89–97.[CrossRef][Medline]

  • Sidhu, H., Hoppe, B., Hesse, A., Tenbrock, A., Brömme, S., Rietschel, E. & Peck, A. B. (1998). Absence of Oxalobacter formigenes in cystic fibrosis patients: a risk factor for hyperoxaluria. Lancet 352, 1026–1029.[CrossRef][Medline]

  • Sidhu, H., Schmidt, M. E., Cornelius, J. G., Thamilselvan, S., Khan, S. R., Hesse, A. & Peck, A. B. (1999). Direct correlation between hyperoxaluria/oxalate stone disease and the absence of the gastrointestinal tract-dwelling bacterium Oxalobacter formigenes: possible prevention by gut recolonization or enzyme replacement therapy. J Am Soc Nephrol 10 Suppl 14, S334–S340.





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